Solr Cloud uses zookeeper to store the config files. Here is how you can download those files from zookeeper. You can use these files to be committed to your version control system.
cd solr-6.1.0/server/scripts/cloud-scripts
./zkcli.sh -zkhost  -cmd downconfig -confdir  -confname

eg:

./zkcli.sh -zkhost 127.0.0.1:9983 -cmd downconfig -confdir myconffolder -confname products

https://cwiki.apache.org/confluence/display/solr/Command+Line+Utilities

https://cwiki.apache.org/confluence/display/solr/Using+ZooKeeper+to+Manage+Configuration+Files

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